Visual Neuroscience Lab
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  1. MRI
  • Home
  • Neurodesktop
  • MRI: from DICOM to GLM Analysis
    • 00 - Overview
    • 01 - DICOM to BIDS
    • 02 - Check IntendedFor field of the fmap’s JSON
    • 03 - T1w for PBn
    • 04 - Defacing
    • 05 - Removing Noise Scan
    • 06 - fMRIprep
    • 07 - Retinotopic Mapping
    • 08 - first level GLM
    • 09- second level GLM
    • Troubleshooting
  • MRI
    • MRI-Studies: General Information
    • 3D printing a brain
    • 7T anatomical analysis on neurodesk
    • MRI BIDS and OSF
    • fMRIprep analysis
    • MNI space
    • Old MRI setup
    • Update to the MRI lab setup
    • Physiological noise correction
  • Behavioral
    • Vision tests
    • BIDS for behavioral studies
    • Custom-built chin rests
  • People
    • Stipends and prizes for master and PhD students
    • Coffee time
    • Participant compensation
    • Things to do if you are leaving the lab
    • Scientific writing in practice
    • Research funding opportunities
  • Internship
    • Pflichtpraktikum
    • Internship Checklist
    • internship/claustrum_segmentation.qmd
  • Other Topics
    • Calculating a priori sample size using G Power
    • Gamma correction
    • Contribute to the website
    • Older ways to access the server
  • Labmeeting
  • Archive
Categories
All (11)
3D-Print (1)
7T (1)
Analysis (4)
BIDS (1)
fmriPrep (1)
MRI (10)
Neurodesk (4)
NNL-Goggles (1)
OSF (1)
Physiology (1)

MRI

Physiological noise correction
MRI
Physiology

Creating physiology regressors using the PhysIO toolbox

MW
Oct 26, 2023
 
MRI-Studies: General Information
MRI

Useful information to consider before and while doing a (f)MRI Study

MG
Jul 21, 2025

Calculating oriented bounding box
MRI
Analysis
Neurodesk

How to use 3D Slicer to calcualte oriented bounding box

AC
Aug 13, 2025

3D printing a brain
MRI
3D-Print

current procedure for 3d printing brains

NZ
Oct 10, 2024

Update to the MRI lab setup
MRI
NNL-Goggles
The MRI lab has had some upgrades in 2024 including:
AC
Oct 7, 2024
 
MRI BIDS and OSF
BIDS
OSF

Information about BIDS and OSF

AA
May 23, 2024

FreeSurfer FSFAST
MRI
Analysis
Neurodesk

Information about running an FSFAST analysis on Neurodesk

AC
Jan 16, 2025

fMRIprep analysis
MRI
Analysis
Neurodesk
fmriPrep

Information about using fMRIprep to preprocess fMRI data

AC
Jul 8, 2024

7T anatomical analysis on neurodesk
MRI
7T
Analysis
Neurodesk

How to run 7 Tesla anatomy analysis on neurodesk

AC
Jan 27, 2025

MNI space
MRI

information about various MNI spaces and templates

NZ
Jul 15, 2025

Old MRI setup
MRI

Information about running experiments in the MRI lab (before the new computer arrived!)

AA
Jan 1, 2023
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