Visual Neuroscience Lab
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  1. MRI
  • Home
  • Neurodesktop
  • MRI: from DICOM to GLM Analysis
    • 01 - DICOM to BIDS
    • 02 - T1w for PBn
    • 03 - Defacing
    • 04 - Removing Noise Scan
    • 05 - fmriprep
    • 06 - first level GLM
    • Troubleshooting
  • MRI
    • Retinotopic Mapping
    • 3D printing a brain
    • 7T anatomical analysis on neurodesk
    • MRI BIDS and OSF
    • fMRIprep analysis
    • Old MRI setup
    • Update to the MRI lab setup
    • Physiological noise correction
  • Behavioral
    • Vision tests
    • BIDS for behavioral studies
    • Custom-built chin rests
  • People
    • Stipends and prizes for master students
    • Coffee time
    • Participant compensation
    • Things to do if you are leaving the lab
    • Scientific writing in practice
    • Interns
    • Pflichtpraktikum
  • Other Topics
    • Calculating a priori sample size using G Power
    • Gamma correction
    • Contribute to the website
    • Lab Members Only!!!
  • Labmeeting
  • Archive
Categories
All (10)
3D-Print (1)
7T (1)
Analysis (3)
BIDS (2)
DICOM (1)
MRI (9)
NNL-Goggles (1)
Neurodesk (4)
OSF (1)
Physiology (1)
Retinotopy (1)
fmriPrep (1)

MRI

3D printing a brain
MRI
3D-Print
current procedure for 3d printing brains
NZ
Oct 10, 2024

7T anatomical analysis on neurodesk
MRI
7T
Analysis
Neurodesk
How to run 7 Tesla anatomy analysis on neurodesk
AC
Jan 27, 2025
 
MRI BIDS and OSF
BIDS
OSF
Information about BIDS and OSF
AA
May 23, 2024

Dicom to Bids conversion
DICOM
BIDS
MRI
Neurodesk
how to convert from dicom’s to bids
AC
Aug 12, 2024

fMRIprep analysis
MRI
Analysis
Neurodesk
fmriPrep
Information about using fMRIprep to preprocess fMRI data
AC
Jul 8, 2024

FreeSurfer FSFAST
MRI
Analysis
Neurodesk
Information about running an FSFAST analysis on Neurodesk
AC
Jan 16, 2025

Old MRI setup
MRI
Information about running experiments in the MRI lab (before the new computer arrived!)
AA
Jan 1, 2023

Update to the MRI lab setup
MRI
NNL-Goggles
The MRI lab has had some upgrades in 2024 including:
AC
Oct 7, 2024

Physiological noise correction
MRI
Physiology
Creating physiology regressors using the PhysIO toolbox
MW
Oct 26, 2023
 
Retinotopic Mapping
MRI
Retinotopy
Procedure to apply the probabilistic retinotopic mapping using the Benson Atlas
MG
May 5, 2025
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