Visual Neuroscience Lab
  • Home
  • Neurodesktop
  • Behavioral
  • Labmeeting
  • DICOM to GLM
  • MRI
  • People
  • Other Topics
  • Archive
  1. MRI
  2. Old MRI setup
  • Home
  • Neurodesktop
  • MRI: from DICOM to GLM Analysis
    • 01 - DICOM to BIDS
    • 02 - T1w for PBn
    • 03 - Defacing
    • 04 - Removing Noise Scan
    • 05 - fmriprep
    • 06 - first level GLM
    • Troubleshooting
  • MRI
    • Retinotopic Mapping
    • 3D printing a brain
    • 7T anatomical analysis on neurodesk
    • MRI BIDS and OSF
    • fMRIprep analysis
    • Old MRI setup
    • Update to the MRI lab setup
    • Physiological noise correction
  • Behavioral
    • Vision tests
    • BIDS for behavioral studies
    • Custom-built chin rests
  • People
    • Stipends and prizes for master students
    • Coffee time
    • Participant compensation
    • Things to do if you are leaving the lab
    • Scientific writing in practice
    • Interns
    • Pflichtpraktikum
  • Other Topics
    • Calculating a priori sample size using G Power
    • Gamma correction
    • Contribute to the website
    • Lab Members Only!!!
  • Labmeeting
  • Archive

On this page

  • General setup information:
  • Experimental Protocol
  1. MRI
  2. Old MRI setup

Old MRI setup

MRI
Information about running experiments in the MRI lab (before the new computer arrived!)
Author

AA

Published

January 1, 2023

General setup information:

  • Make sure to switch to the Linux computer (the button number 2 under the monitor)
  • Login with credentials you received

image
  • Once logged in:
  • If you plan to use MATLAB, you’re going to need internet connection: Einstellungen -> Netzwerk -> Kabel -> Here you can choose between Internet or Eyelink (it should default to the internet)
  • Check if the trigger box is connected to the computer (and at the correct USB Port is used – bottom right):

image
  • Start MATLAB / Octave and test the trigger box with the script response_box_check.m

image
  • 8 lights on the left are blinking whenever the 8 buttons on the response boxes are being pressed
  • On the right, the top light is constantly turned on if it is connected to the computer. On the bottom, the light is blinking whenever the scanner trigger is being sent.

Experimental Protocol

  • Participants can fill out the forms in the lobby. You can also instruct them there.
  • Paperwork: …
  • Snellen chart is available behind one of the changing rooms. There, an MRI-compatible googles are available as well, with lenses of different diopters in the suitcase. The goggles and lenses should be disinfected before and after each use!
Back to top