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May 22, 2024

Reading list

Journal club reading list (will be updated as I come across new papers that may be useful; suggestions are welcome!)

Margulies et al., 2016: Hierarchy of areas based on the resting-state data: https://www.pnas.org/doi/10.1073/pnas.1608282113
Glasser parcellation of the cortex, which everyone is using now: https://www.nature.com/articles/nature18933
Multiple comparison correction methods for fMRI (no specific paper yet)
HCP processing pipeline and CIFTI format (alternative to fmriprep and state-of-the-art for 7 T preprocessing): https://www.sciencedirect.com/science/article/pii/S1053811913005053?via%3Dihub
Resting-state connectivity of subcortical structures (including the claustrum) https://www.jneurosci.org/content/43/39/6609
Neuroquery https://elifesciences.org/articles/53385
Neurodesk https://www.nature.com/articles/s41592-023-02145-x
White matter activations https://www.pnas.org/doi/10.1073/pnas.2219666120

Self et al., 2019: ephys signatures of figure-ground segmentation in macaque V1: https://www.sciencedirect.com/science/article/pii/S0960982219301551
Recent findings from Tsao lab: https://www.pnas.org/doi/10.1073/pnas.2221122120
DMN and awareness: https://www.nature.com/articles/s41467-022-34410-6
Perceptography: https://www.biorxiv.org/content/10.1101/2022.10.24.513337v2
Perceptography in humans using visual illusions: https://www.science.org/doi/full/10.1126/sciadv.adj3906

Statistical power (small sample sizes): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267527/
Statistical power: https://elifesciences.org/articles/62461
Experimental methods: https://www.frontiersin.org/articles/10.3389/fnhum.2018.00421/full
Scientific writing: https://stevenpinker.com/files/pinker/files/descioli_pinker_2021_piled_modifiers.pdf
Randomization techniques for statistical inference: permutation, bootstrapping, Monte Carlo simulations (no specific paper yet)