Visual Neuroscience Lab
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  • DICOM to GLM
  • MRI
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  1. Home
  • Home
  • Neurodesktop
  • MRI: from DICOM to GLM Analysis
    • 00 - Overview
    • 01 - DICOM to BIDS
    • 02 - Check IntendedFor field of the fmap’s JSON
    • 03 - T1w for PBn
    • 04 - Defacing
    • 05 - Removing Noise Scan
    • 06 - fMRIprep
    • 07 - Probabilistic Retinotopic Mapping
    • 09 - ROI Analysis
    • Troubleshooting
  • MRI
    • MRI studies: general information
    • 3D printing a brain
    • 7T anatomical analysis on neurodesk
    • MRI BIDS and OSF
    • fMRIprep analysis
    • MNI space
    • Control Masks
    • Old MRI setup
    • Update to the MRI lab setup
    • Physiological noise correction
  • Behavioral
    • Vision tests
    • BIDS for behavioral studies
    • Custom-built chin rests
  • People
    • Stipends and prizes for master and PhD students
    • Coffee time
    • Participant compensation
    • Things to do if you are leaving the lab
    • Scientific writing in practice
    • Research funding opportunities
  • Internship
    • Pflichtpraktikum
    • Internship Checklist
    • internship/claustrum_segmentation.qmd
  • Other Topics
    • Calculating a priori sample size using G Power
    • Gamma correction
    • Contribute to the website
    • Older ways to access the server
  • Labmeeting
  • Archive

Visual Neuroscience lab

About

We investigate how subjective experience arises from sensory input and how this is represented in the brain.

PI: Natalia Zaretskaya


Recent Changes

MRI studies: general information

Useful information to consider before and while doing a (f)MRI study

MG, NZ
May 21, 2026
 
Calculating authorship

Calculating authorship of a manuscript according to the Elsevier CRediT author statement

AC, NZ
Apr 15, 2026
 
08 - first level GLM

Several approaches to run a first level GLM using nilearn

MG
Mar 12, 2026

Control Masks

Approach to generate dilated and shifted control masks

MG
Dec 16, 2025
 
09 - ROI Analysis

Example of ROI Analysis

MG
Dec 16, 2025
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